Add provider for metacyc prefix and consider new prefix for unique IDs #1294
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Codecov ReportAll modified and coverable lines are covered by tests ✅
Additional details and impacted files@@ Coverage Diff @@
## main #1294 +/- ##
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+ Coverage 42.51% 46.62% +4.10%
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Files 117 118 +1
Lines 8327 8286 -41
Branches 1963 1362 -601
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+ Hits 3540 3863 +323
+ Misses 4582 4238 -344
+ Partials 205 185 -20 ☔ View full report in Codecov by Sentry. |
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We can get back to this once we know more about #1335 |
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PubMed: https://pubmed.ncbi.nlm.nih.gov/39558185/
Database: PlantCyc
This resource has 4 different sematic spaces: Compunds, Reactions, Pathways and Gene/Proteins
The first 3 use the same identifier information from
metacyc.compound,metacyc.pathwayandmetacyc.reaction. They are curated as providers for these resources respectively.The Gene/Protein subspace seems to have a mix of IDs used.
tairpages in the Bioregistry seem to be outdated and not resolving IDs as expected so I have not curated anything under this prefix until I fix those. example of a tair ID